hrchy_cytocommunity.tools.data_preprocessing

Functions

compute_knn(coords, K, sample_id[, save_folder])	Construct a K-Nearest Neighbor (KNN) graph and optionally save it to file.
formulate_HRCHYCytoCommunity_input_from_anndata_singlecell(...)	Formulate HRCHY-CytoCommunity input files from a single-cell spatial transcriptomics AnnData object.
formulate_HRCHYCytoCommunity_input_from_anndata_spot(...)	Formulate HRCHY-CytoCommunity input files from an AnnData object of spatial transcriptomics data with cell type deconvolution results.