Index

_

__init__() (hrchy_cytocommunity.models.auto_k.HRCHYClusterAutoK method) (hrchy_cytocommunity.models.dataset.SpatialOmicsImageDataset method) (hrchy_cytocommunity.models.HRCHYCytoCommunity method) (hrchy_cytocommunity.models.HRCHYCytoCommunity.HRCHYCytoCommunity method) (hrchy_cytocommunity.models.HRCHYCytoCommunity.HRCHYCytoCommunityGrand method)

C

compute_knn() (in module hrchy_cytocommunity.tools.data_preprocessing)

D

data (hrchy_cytocommunity.models.dataset.SpatialOmicsImageDataset attribute) device (hrchy_cytocommunity.models.HRCHYCytoCommunity attribute) (hrchy_cytocommunity.models.HRCHYCytoCommunity.HRCHYCytoCommunity attribute) (hrchy_cytocommunity.models.HRCHYCytoCommunity.HRCHYCytoCommunityGrand attribute)

download() (hrchy_cytocommunity.models.dataset.SpatialOmicsImageDataset method)

E

edge_pruning_cutoff (hrchy_cytocommunity.models.HRCHYCytoCommunity attribute) (hrchy_cytocommunity.models.HRCHYCytoCommunity.HRCHYCytoCommunity attribute) (hrchy_cytocommunity.models.HRCHYCytoCommunity.HRCHYCytoCommunityGrand attribute)

F

formulate_HRCHYCytoCommunity_input_from_anndata_singlecell() (in module hrchy_cytocommunity.tools.data_preprocessing)

formulate_HRCHYCytoCommunity_input_from_anndata_spot() (in module hrchy_cytocommunity.tools.data_preprocessing)

H

hrchy_cytocommunity.models.auto_k module hrchy_cytocommunity.models.dataset module hrchy_cytocommunity.models.net module hrchy_cytocommunity.tools.data_preprocessing module

hrchy_cytocommunity.visualization.visualization module HRCHYClusterAutoK (class in hrchy_cytocommunity.models.auto_k) HRCHYCytoCommunity (class in hrchy_cytocommunity.models) (class in hrchy_cytocommunity.models.HRCHYCytoCommunity) HRCHYCytoCommunityGrand (class in hrchy_cytocommunity.models.HRCHYCytoCommunity)

L

load_base_data() (in module hrchy_cytocommunity.visualization.visualization)

M

model (hrchy_cytocommunity.models.HRCHYCytoCommunity attribute) (hrchy_cytocommunity.models.HRCHYCytoCommunity.HRCHYCytoCommunity attribute) (hrchy_cytocommunity.models.HRCHYCytoCommunity.HRCHYCytoCommunityGrand attribute) module hrchy_cytocommunity.models.auto_k hrchy_cytocommunity.models.dataset hrchy_cytocommunity.models.net hrchy_cytocommunity.tools.data_preprocessing hrchy_cytocommunity.visualization.visualization

P

process() (hrchy_cytocommunity.models.dataset.SpatialOmicsImageDataset method)

processed_file_names() (hrchy_cytocommunity.models.dataset.SpatialOmicsImageDataset method) processed_paths (hrchy_cytocommunity.models.dataset.SpatialOmicsImageDataset attribute)

R

raw_file_names() (hrchy_cytocommunity.models.dataset.SpatialOmicsImageDataset method)

S

slices (hrchy_cytocommunity.models.dataset.SpatialOmicsImageDataset attribute)

SpatialOmicsImageDataset (class in hrchy_cytocommunity.models.dataset)

V

vis_heatmap() (in module hrchy_cytocommunity.visualization.visualization)

vis_scatter_label() (in module hrchy_cytocommunity.visualization.visualization)